Index _ | A | B | C | D | F | G | H | L | M | N | O | P | Q | R | S | T | U | V _ _is_integerish() (in module bullkpy.pp) A add_metadata() (in module bullkpy.io) adjusted_rand_index() (in module bullkpy.tl) ari_resolution_heatmap() (in module bullkpy.pl) association() (in module bullkpy.tl) association_heatmap() (in module bullkpy.pl) B batch_correct_combat() (in module bullkpy.pp) boxplot_with_stats() (in module bullkpy.pl) C categorical_association() (in module bullkpy.tl) categorical_confusion() (in module bullkpy.pl) cluster() (in module bullkpy.tl) cluster_metrics() (in module bullkpy.tl) corr_heatmap() (in module bullkpy.pl) corrplot() (in module bullkpy.pl) D de() (in module bullkpy.tl) de_glm() (in module bullkpy.tl) dotplot() (in module bullkpy.pl) dotplot_association() (in module bullkpy.pl) F filter_genes() (in module bullkpy.pp) filter_samples() (in module bullkpy.pp) find_bad_obs_cols_by_write() (in module bullkpy.pp) G gene_association() (in module bullkpy.pl) gene_association_volcano() (in module bullkpy.pl) gene_categorical_association() (in module bullkpy.tl) gene_gene_correlations() (in module bullkpy.tl) gene_plot() (in module bullkpy.pl) genes_vs_mt_fraction() (in module bullkpy.pl) gsea_bubbleplot() (in module bullkpy.pl) gsea_leading_edge_heatmap() (in module bullkpy.pl) gsea_preranked() (in module bullkpy.tl) H heatmap_association() (in module bullkpy.pl) heatmap_de() (in module bullkpy.pl) highly_variable_genes() (in module bullkpy.pp) L leading_edge_jaccard_heatmap() (in module bullkpy.pl) leading_edge_overlap_matrix() (in module bullkpy.pl) leiden_resolution_scan() (in module bullkpy.tl) library_size_vs_genes() (in module bullkpy.pl) list_enrichr_libraries() (in module bullkpy.tl) log1p() (in module bullkpy.pp) M ma() (in module bullkpy.pl) mt_fraction_vs_counts() (in module bullkpy.pl) N neighbors() (in module bullkpy.tl) normalize_cpm() (in module bullkpy.pp) O obs_obs_corr_matrix() (in module bullkpy.tl) oncoprint() (in module bullkpy.pl) P pairwise_posthoc() (in module bullkpy.tl) partial_corr() (in module bullkpy.tl) pca() (in module bullkpy.tl) pca_loadings() (in module bullkpy.tl) pca_loadings_bar() (in module bullkpy.pl) pca_loadings_heatmap() (in module bullkpy.pl) pca_scatter() (in module bullkpy.pl) pca_variance_ratio() (in module bullkpy.pl) plot_corr_heatmap() (in module bullkpy.tl) plot_corr_scatter() (in module bullkpy.tl) posthoc_per_gene() (in module bullkpy.tl) Q qc_by_group() (in module bullkpy.pl) qc_metrics() (in module bullkpy.pl) (in module bullkpy.pp) qc_pairplot() (in module bullkpy.pl) qc_scatter_panel() (in module bullkpy.pl) R rank_genes_groups() (in module bullkpy.pl) (in module bullkpy.tl) rank_genes_groups_dotplot() (in module bullkpy.pl) rankplot() (in module bullkpy.pl) rankplot_association() (in module bullkpy.pl) read_counts() (in module bullkpy.io) S sample_correlation_clustergram() (in module bullkpy.pl) sample_distances() (in module bullkpy.pl) sanitize_metadata() (in module bullkpy.pp) score_genes() (in module bullkpy.tl) score_genes_cell_cycle() (in module bullkpy.tl) score_genes_dict() (in module bullkpy.tl) set_raw_counts() (in module bullkpy.pp) T top_gene_gene_correlations() (in module bullkpy.tl) top_gene_obs_correlations() (in module bullkpy.tl) top_obs_obs_correlations() (in module bullkpy.tl) U umap() (in module bullkpy.pl) (in module bullkpy.tl) umap_graph() (in module bullkpy.tl) V violin() (in module bullkpy.pl) volcano() (in module bullkpy.pl) volcano_categorical() (in module bullkpy.pl)